Overview | Available view sets | Plotting the default view | Plotting the split-style view | Plotting the axial view | Listing available tract names | Showing full tract names in the legend | Plotting tract-level values | Setting colour scale limits | Customising colours | Hiding ventricles | Saving figures | Notes on interpretation | Working with ABCD DTI variables | Looking up ABCD DTI variable names | Looking up other DTI metrics | Checking ABCD variable names by tract | Converting wide ABCD data to long format | Plotting summarised ABCD DTI values | References
Package: ggAtlasTrack 0.1.3
ggAtlasTrack: ggplot2 Visualisation Tools for AtlasTrack White Matter Tracts
Provides ggplot2-based two-dimensional visualisations of AtlasTrack white-matter tract polygons in three view sets - orthogonal, ggseg, and axial. Supports categorical tract plots and tract-level continuous values.
Authors:
ggAtlasTrack_0.1.3.tar.gz
ggAtlasTrack_0.1.3.zip(r-4.7-any)ggAtlasTrack_0.1.3.zip(r-4.6-any)ggAtlasTrack_0.1.3.zip(r-4.5-any)
ggAtlasTrack_0.1.3.tgz(r-4.6-any)ggAtlasTrack_0.1.3.tgz(r-4.5-any)
ggAtlasTrack_0.1.3.tar.gz(r-4.7-any)ggAtlasTrack_0.1.3.tar.gz(r-4.6-any)
ggAtlasTrack_0.1.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
ggAtlasTrack/json (API)
| # Install 'ggAtlasTrack' in R: |
| install.packages('ggAtlasTrack', repos = c('https://hbyrne07.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/hbyrne07/ggatlastrack/issues
Datasets:
- atlastrack_abcd_tract_lookup - ABCD DTI variable lookup for AtlasTrack tracts
- atlastrack_background - AtlasTrack 2D background polygons
- atlastrack_tracts - AtlasTrack 2D tract polygons
- atlastrack_views - AtlasTrack available views
neuroimagingdiffusion mridtiwhite mattertractographyatlastrackabcdggplot2ggsegbrain atlas
Last updated from:94d7b5c8a2. Checks:7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | NOTE | 152 | ||
| source / vignettes | OK | 192 | ||
| linux-release | NOTE | 120 | ||
| macos-release | NOTE | 240 | ||
| macos-oldrel | NOTE | 175 | ||
| windows-devel | NOTE | 92 | ||
| windows-release | NOTE | 93 | ||
| windows-oldrel | NOTE | 75 | ||
| wasm-release | OK | 130 |
Exports:atlastrack_abcd_lookupatlastrack_abcd_to_longatlastrack_abcd6_to_longatlastrack_plotatlastrack_tract_namesatlastrack_views_available
Dependencies:classclassIntclicpp11DBIdplyre1071farvergenericsggplot2gluegtableisobandKernSmoothlabelinglifecyclemagrittrpillarpkgconfigproxypurrrR6RColorBrewerRcpprlangs2S7scalessfstringistringrtibbletidyrtidyselectunitsutf8vctrsviridisLitewithrwk
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Show ABCD DTI variable names matched to AtlasTrack tracts | atlastrack_abcd_lookup |
| Convert ABCD DTI columns to AtlasTrack long format | atlastrack_abcd_to_long |
| ABCD DTI variable lookup for AtlasTrack tracts | atlastrack_abcd_tract_lookup |
| Convert ABCD 6.0 DTI columns to AtlasTrack long format | atlastrack_abcd6_to_long |
| AtlasTrack 2D background polygons | atlastrack_background |
| Plot AtlasTrack white-matter tracts | atlastrack_plot |
| List available AtlasTrack tract names | atlastrack_tract_names |
| AtlasTrack 2D tract polygons | atlastrack_tracts |
| AtlasTrack available views | atlastrack_views |
| Show available AtlasTrack views | atlastrack_views_available |